SNP Profiles matching ICS 8

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
1._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
2._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
3._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
4._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
5._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
6._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
7._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
8._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
9._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
10._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
11._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
12._NA_95	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
13._NA_95	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
14._GC-01-122-6-19	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
15._GC-08-168-4-11	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
16._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	_	GG
17._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
18._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	_	GG
19._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
20._PA_81_[PER]	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
21._RUQ_1585	_	AA	GG	CC	_	_	_	TT	_	_	_	_	CT	GG
22._RUQ_1460	_	AA	GG	CC	_	_	_	TT	_	_	_	_	CT	GG
23._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
1._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
2._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
3._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
4._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
5._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
6._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
7._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
8._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
9._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
10._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
11._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
12._NA_95	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
13._NA_95	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
14._GC-01-122-6-19	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
15._GC-08-168-4-11	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
16._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
17._ICS_8	CT	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC
18._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
19._GC-08-054-1-65	CT	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC
20._PA_81_[PER]	CT	AA	GG	TT	CC	GG	-	GG	TT	CC	CC	TT	TT	CC
21._RUQ_1585	_	_	_	_	CC	GG	GG	_	TT	CC	CC	TT	TT	CC
22._RUQ_1460	_	_	_	_	CC	GG	GG	_	TT	CC	CC	TT	TT	CC
23._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
1._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
2._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
3._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
4._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
5._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
6._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
7._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
8._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
9._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
10._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
11._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
12._NA_95	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
13._NA_95	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
14._GC-01-122-6-19	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
15._GC-08-168-4-11	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
16._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
17._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
18._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
19._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
20._PA_81_[PER]	AA	GG	AA	CC	AG	-	AC	CT	GT	AC	TT	GG	X_X	X_X
21._RUQ_1585	AA	_	-	CC	AG	CC	AC	CT	GT	AC	_	_	X_X	X_X
22._RUQ_1460	AA	_	-	CC	AG	CC	AC	CT	GT	AC	_	_	X_X	X_X
23._ICS_8	AA	AG	AA	CC	AG	_	AC	CT	GT	AC	TT	GG	X_X	X_X

Input profile: ICS_8

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Mars Center for Cocoa Science, Brazil

Location: 8165 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._ICS_8

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 3 > FP

Dapeng Zhang, 2016

2._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 2 > FP

Dapeng Zhang, 2016

3._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 9

Dapeng Zhang, 2016

4._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 8

Dapeng Zhang, 2016

5._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 7

Dapeng Zhang, 2016

6._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

7._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

8._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

10._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

12._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8411 3

Dapeng Zhang, 2016

13._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1619 9 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._NA_95 GC-01-122-6-19

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

15._NA_95 GC-08-168-4-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

16._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 1 > FP

Dapeng Zhang, 2016

17._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 10

Dapeng Zhang, 2016

18._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

19._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

20._PA_81_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A F527 T2

Dapeng Zhang, 2014

21._CRU_104 RUQ_1585

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

22._CRU_111 RUQ_1460

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

23._ICS_8

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block5

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25